chore: updated pre-commit hook dependencies

[SYMSCAE]

Summary

This PR performs pre-commit hook maintenance by updating formatter, linter, and tooling hook revisions.

Changes

• Updated pre-commit-hooks from v4.6.0 to v6.0.0
• Updated black from 24.4.2 to 26.3.1
• Updated flake8 from 7.0.0 to 7.3.0
• Updated isort from 5.13.2 to 9.0.0a3
• Updated nbstripout from 0.7.1 to 0.9.1
• Updated codespell from v2.3.0 to v2.4.2
• Changed formatter from ruff to docformatter, resolves Change ruff to docformatter 1.7.8 #28

[SYMSCAE]

@stevenhua0320 PR ready to review.

[stevenhua0320]

@SYMSCAE We are going to use docformatter to be consistent across all packages, so the way we will fix this is summarized in the issue here #28, please read that and make the corresponding edit.

[SYMSCAE]

@stevenhua0320 Please verify the changes.

[stevenhua0320]

Looks good, @sbillinge ready for review.

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 81.63%. Comparing base (67b0e9a) to head (9f86923).

Additional details and impacted files

@@           Coverage Diff           @@
##             main      #29   +/-   ##
=======================================
  Coverage   81.63%   81.63%           
=======================================
  Files           3        3           
  Lines          49       49           
=======================================
  Hits           40       40           
  Misses          9        9           

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[sbillinge]

@SYMSCAE please see an issue I added, #30 . Meanwhile, this is passing tests so I can merge it.