Task/sdev 5403 hrd kb category

[mathieulemieux]

No description provided.

[Copilot]

Pull request overview

This PR expands HRD (homologous recombination deficiency) support by (a) adding an integration test that exercises HRD signature annotation and (b) tightening the report-content JSON schema to only accept known HRD kbCategory values.

Changes:

• Added GraphKB-backed annotation test coverage for the HRD “strong signature” category (and a skipped test placeholder for “moderate”).
• Restricted hrd.kbCategory in the content JSON schema to an explicit enum of the two supported HRD categories.

Reviewed changes

Copilot reviewed 2 out of 2 changed files in this pull request and generated 1 comment.

File	Description
tests/test_ipr/test_annotate.py	Adds HRD signature annotation test(s) using HRD_MAPPING.
pori_python/ipr/content.spec.json	Constrains hrd.kbCategory to the supported HRD category strings via enum.

---

💡 Add Copilot custom instructions for smarter, more guided reviews. Learn how to get started.

[mathieulemieux]

Had to change enum into examples so other, non hr deficient categories, can be passed.

[codecov-commenter]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 83.93%. Comparing base (4be81db) to head (bb9c6ae).

Additional details and impacted files

@@             Coverage Diff             @@
##           develop     #116      +/-   ##
===========================================
- Coverage    84.12%   83.93%   -0.20%     
===========================================
  Files           18       18              
  Lines         2608     2608              
===========================================
- Hits          2194     2189       -5     
- Misses         414      419       +5     

Flag	Coverage Δ
unittests	83.93% <ø> (-0.20%)	⬇️

Flags with carried forward coverage won't be shown. Click here to find out more.

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

🚀 New features to boost your workflow:

• ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.