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Release/v1.5.0#114

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mathieulemieux merged 84 commits into
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release/v1.5.0
May 21, 2026
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Release/v1.5.0#114
mathieulemieux merged 84 commits into
mainfrom
release/v1.5.0

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@mathieulemieux mathieulemieux commented May 20, 2026

Improvements

  • [DEVSU-2815] Make access to ipr_report() project-specific #94
  • [DEVSU-2830] Add support for canonical transcripts file and flags to observed variants in ipr_report() #107
  • [DEVSU-2848] Reformat SeqQC input in ipr_report() #109
  • [KBDEV-1346] Add version property to GraphKBConnection #112
  • [KBDEV-1532] Add get_cancer_gene_flags() and use consensus defenition of cancer gene #113
  • [SDEV-5340] Format json output from ipr_report() #110

Bugfixes:

  • [DEVSU-2909] Fix null values for signature variants in ipr_report() #108

sshugsc and others added 30 commits January 29, 2026 12:27
mathieulemieux and others added 20 commits May 13, 2026 16:27
…access-project-specific

Feat/devsu 2815 make create report access project specific
…se-children-nodes

Update get_cancer_genes() to fit consensus defenition of cancer gene
@mathieulemieux mathieulemieux self-assigned this May 20, 2026
@mathieulemieux mathieulemieux review requested due to automatic review settings May 20, 2026 15:46
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Codecov Report

❌ Patch coverage is 96.00000% with 6 lines in your changes missing coverage. Please review.
✅ Project coverage is 83.93%. Comparing base (8232c69) to head (e54ebfe).

Files with missing lines Patch % Lines
pori_python/ipr/main.py 77.27% 5 Missing ⚠️
pori_python/ipr/inputs.py 94.44% 1 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main     #114      +/-   ##
==========================================
+ Coverage   83.18%   83.93%   +0.74%     
==========================================
  Files          18       18              
  Lines        2480     2608     +128     
==========================================
+ Hits         2063     2189     +126     
- Misses        417      419       +2     
Flag Coverage Δ
unittests 83.93% <96.00%> (+0.74%) ⬆️

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@mathieulemieux mathieulemieux merged commit da00821 into main May 21, 2026
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5 participants